Results for "QC"
Top-level pages
Best book Titles for Learning Bionformatics
...60545 http://www.amazon.com/Introduction-Bioinformatics-Algorithms-Computational-Molecular/dp/0262101068 http://books.google.no/books?id=pxSM7R1sdeQC&dq=Pierre+baldi+%2B+bioin...3914 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...cing data. Cox et al, BMC Bioinformatics 11:485, 2010. PubMedCentral TileQC: a system for tile-based qual...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubMed FastQC: a quality control tool for h...3776 days ago
Next generation sequencing in R or bioconductor environment
...and annotation information along genomic coordinates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genomic information from Ensembl TileQC: Flow Cell Quality Visualizat...3621 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p...
3546 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...y tailored to Oxford Nanopore Reads, written in Python; Package comes with 3 programs, marginAlign, marginCaller (calls SNVs), marginStats (computes qc stats on sam files) Input: S...2905 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...bsp;k-mer counts Software (C++) https://github.com/luscinius/afcluster QCluster Clustering of reads wi...and quality values Software (C++) http://www.dei.unipd.it/~ciompin/main/qcluster.html Reads error corre...2368 days ago
Single Cell RNAseq data analysis tutorial !!
...m for inferring cell trajectories https://github.com/jw156605/SLICER SinQC: A Method and Tool to Control Single-cell RNA-seq Data Quality http://www.morgridge.net/SinQC.html TSCAN: Pseudo-time reco...2347 days ago
Understanding BLASTn output format 6 !
...in alphabetical order) stitle Subject Titlesalltitles All Subject Title(s), separated by a '<>'sstrand Subject Strandqcovs Query Coverage Per Subjectqcovhsp Query Coverage Per HSP...2135 days ago
List of non-commercial NGS genotype-calling software
...genotype likelihoods Software for imputation and phasing, including a mode for genotype calling. Requires fine-scale linkage map QCall ftp://ftp.sanger.ac.uk/pub/rd/QCALL Multi-sample LD ‘Fe...2093 days ago
