Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome ass...431 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping t...1352 days ago
Comment on "QUAST: quality assessment tool for genome assemblies"
Understanding the terms used in QUAST http://quast.bioinf.spbau.ru/manual.html2560 days ago
Comment on "QUAST: quality assessment tool for genome assemblies"
You can also try LAZER, it produces the same evaluation as Quast but is 5.6 times faster and use half the memory http://www.csd.uwo.ca/~ilie/LASER/2713 days ago