2952 days ago
2951 days ago
2944 days ago
2944 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving hea...ed analysis tools such as HOMER. Setting up your computing...(microarray or RNA-Seq) Microarray Basic analysis of Af...2944 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and...ps short reads with respect to user defined error threshold, incl...find 'all' mappings for a given set of reads, however...2944 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). Th...to use and report issues encountered. Canu is a hierachical ass...le trimmed corrected sequences Read the documentation Ne...2927 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the h...lex data sets. More at http://www.broadinstitute.org/annotation/me...2944 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...ash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection i...nbsp;conditional exclusive compression, namely using a FCM (Ma...p;SVG image, with an ideogramoutput architecture, where t...he research is to know where the large-scale [chromosomal...2944 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Tec...was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard soft...genes and RNA) and annotating their functions. Recently, in order...he RAST tool kit (RASTtk), a modular version of RAST that enables...2943 days ago