Results for "R"
Top-level pages
Bioinformatics infrastructure speed up Indian agriculture
"Realizing the paradigm shift it can bring about, the government is focusing on increased bioinformatics intervention in agri-sciences. Currently under process, the national grid on....biospectrumindia.com/biospecindia/features/203849/supercomputing-india...3702 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified...roject.org/ C++ library and framework for molecular modeling...ement system designed to support researchers in drug discover...ive visual exploration of diverse genomic data IntAct http:...3749 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://s...PocketQuery: http://pocketquery.csb.pitt.edu/ is a web...D, which uses an automatic approach for cluster identificatio...nces or the folds of the compared proteins. The input to the...3736 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and...to simulate the evolution of recombinant DNA sequences in co...Testing and Evaluating Software: Simulates complex SNP model...samples, to evaluate estimators or statistical tests, and ge...3729 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utili...which will help you to manage your systems effectively and handl...es heavily on Linux-based computers and software. Although most...tasks. The focus of this linux series is to help you understand...3698 days ago
Perl one-liner for bioinformatician !!!
...ncing data most of the bioinformaticians mung and wrangle around massive amounts o..., will now take you seconds!perl -pe '$\="\n"' #d...hat match a patternperl -ne 'printf "%-5d %s", $., $_ if /reg...tes an array of odd numbers.perl -le '@even = grep {$_ % 2 ==...3620 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The...ly becoming a universal standard alignment format, and is now...ntified from either ChIP-seq or ChIP-chip experiments. It inc...3617 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, R...f any size. It seeks to align reads from nonunique repeats us...ks. Vmatch subsumes the software tool REPuter, but is much mo...matic Scoring of ChIP-Seq Experiments Relative to Controls. a...3511 days ago
- Since few years miRNA has shown to play important role in therapeutic related research and also known to play...ysis : http://tools.genxpro.net/omiras/ miRNApath( R ba...ld.de/rnahybrid/welcome.html RNA22 predictor : http://c...com/ssa_mirnas_db_home.php miRNA prediction on UTRs : h...
3488 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess impor...all p=Popen(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fo...
3541 days ago
