Results for "R"
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poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a s...Tags: poRe, R, package, visualization, analysis, nanopore, sequencing, data
2352 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a number plots for examining the statistics that we think will be useful for this task. However, nanopore sequencing is an emergi...Tags: tools, quality, assessment, Oxford, Nanopore, MinION, sequencer, IONiseR, R
2352 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out there: it takes about a minute to analyse a 4GB flo...Tags: MinION_GC, R, script, QC, MinION, data
2342 days ago
- It may take a little while to load all charts. Please be patient. All charts require an Internet connection. These examples are taken from the googleVis demo. You can execute the demo via library(googleVis) demo(googleVis) For more details about the charts and further examples see the helpf...
Tags: R, googleVis, examples
2335 days ago
How to fix the MacOS error for ‘ddalpha’ R package installation ?
> install.packages(c('ddalpha', 'recipes')) There is a binary version available but the source version is later: binary source needs_compilation ddalpha 1.3.1 1.3.1.1 TRUE Do you wa...Tags: R, ddalpha, package
2280 days ago
