Results for "RA"
Top-level pages
...t-of-spec fastq files with qualities values like -17 or 120. The program has been gradually expanded, and can now p...n an interleaved file: reformat.sh in=x.fq out=y.fq reads=20000 samplerate=0.1 int=t (in this case "in...2716 days ago
- ...write, and execute, and everyone else can read and execute - good for programs that you want to share ...ed file.tar containing files tar xf file.tar — extract the files from file.tar&nbs...
2876 days ago
- ...ontent.com/santhilalsubhash/1e7cca357e52a181dc25/raw/cfb803e07900a2baefbb6534f129...ple.GTF) file to annotation table format. It generated two files1) Transcript wis...ontent.com/santhilalsubhash/c92006c5080f0333bec2/raw/d16e0b2440d73b09b486d3c9751c...
2108 days ago
- ...CIGAR String: Compact Idiosyncratic Gapped Alignment Report. A...rmat: text format for storing raw sequence data along with qua...useful for identifying structural rearrangements, including ge...ertions, deletions and structural rearrangements. See also BCF...
2871 days ago
Genome Assembly Tools and Software - PART1 !!
...c sequences and the reads coverage information or sequencing r...functionalities, and can generate much longer repeats than ex...be used to evaluate de novo transcriptome assemblies, althoug...novo 2.0.1 – Highly-accurate de novo Assembler of Paired...2687 days ago
Source Code and Pseudo Code !!
...ormal language that helps programmers develop algorithms. Pseu...Set total to zero Set grade counter to one While grade...har is found (get first character on the line) set ca...ialized as part of their declarations. E.g. "initialize count...2661 days ago
Perl Special Vars Quick Reference
...t successful match string (degrades performance). ${^PREM...{^OPEN} Internal use: \0 separated Input / Output layer infor...$: Format line break characters $^L Form feed (def...Signal handlers. $[ Array and substr first element (De...2646 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these f...ore, in the absence of structural variants, mapping locations...minimum and maximum expected fragment size.discordant reads:&n...2524 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/My...multitasking and networking framework for any event loop. kr...of git and spark and Perl. Aralhach/bashobfus - A small...l gnustavo/Git-Hooks - Framework for implementing Git (a...2491 days ago
- ...n the system. > library(gdata) &nb...re-installed. > library(XLConnect) ...ge. There is a "to.data.frame" option for choosing w...pean locales, as the comma character serves as the decimal poi...
2491 days ago
