Results for "RNA sequencing"
Top-level pages
List of bioinformatics open source projects/software.
...forge.net/ Suite of packages for sequencing, searching, etc. Gagg...tional genomics experiments, e.g. RNA-seq or ChIP-seq. GeneTalk h...using a supra-hexagonal map Taverna workbench Tool for designing and ex...kage to analyse next-generation resequencing data3770 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ct different isoforms and alternate splicing from RNA-Seq data...he experimental pipelines for RNA-Seq, employing a minimal set...v/gasp/GemSIM Next generation sequencing read simulator http://...w.ebi.ac.uk/projects/bargen/kernalPop A spatially explicit population...3750 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file format...3641 days ago
Next generation sequencing in R or bioconductor environment
...quences produced by high throughput sequencing technologies. While support is provided for many sequencing technologies, this pac...ormats (such as GFF). See the Small RNA Profiling exercise for an example of...rms, find the nearest gene, exon, miRNA or custom features such as most cons...3637 days ago
Commercial and public next-gen-seq (NGS) software
...ysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Alle...s, emerged by next-generation sequencing technology, back to the refer...ompleted will handle next-gen sequencing data. A partially implemented...3532 days ago
- ...DBs and tools related with miRNA: miRNA Sequencing data analysis : h...http://starbase.sysu.edu.cn/ Sequencing based miRNA DB : http://...com/ssa_mirnas_db_home.php miRNA prediction on UTRs : http://gen...html Idea of analysing miRNA Sequencing data : http://www.illumina.c...
3509 days ago
Apps for Busy Bioinformatics Researchers !!!
...e opening and analysis of DNA sequencing files - ab1. It includes hand...includes a RSS reader for journal feeds as well as a PubMed viewer....haring View RSS feeds for journals Query GeneRIF interactions, COSMI...yzing cases with whole genome sequencing data that have been published...3554 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basics of R, focusing...plication specific tasks. e.g. analysis of microarray experiments and Next-Gen sequencing (bioconductor: including Bios...3374 days ago
Software packages for next gen sequence analysis
...ads against a range of Refseq RNA or NCBI genome builds for a number o...s, emerged by next-generation sequencing technology, back to the refer...c * PolyBayesShort - A re-incarnation of the PolyBayes SNP discovery t...es from the 454 Life Sciences sequencing machines. It was designed to...3255 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nt tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualiz...Gene expression including alternative splicing, miRNA expressio...ll commercial next generation sequencing and microarray file format as...annels for analysis of single RNA/DNA structures) software pipeline; t...2921 days ago
