PEAR: a fast and accurate Illumina Paired-End reAd mergeR
..., memory-efficient and highly accurate pair-end read merger. It is fully paralleli...memory. PEAR evaluates all possible paired-end read overlaps and without requirin...ementation, it can merge millions of paired end reads within a couple of minutes o...2945 days ago
REAPR: a universal tool for genome assembly evaluation
...cy of a genome assembly using mapped paired end reads, without the use of a refere...as input an assembly in FASTA format and paired reads mapped to the assembly in a...e mis-assemblies. REAPR works best using mapped read pairs from a large insert lib...2945 days ago
2936 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...trailing low quality or N bases (below quality 3) (TRAILING:3) Scan the read with a 4-base wide sliding wi...n the average quality per base drops below 15 (SLIDINGWINDOW:4:15) Drop reads below the 36 bases long (MIN...2936 days ago
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mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasi...d segmental duplications. mrFAST maps short reads with respect to user defined...bsp;'all' mappings for a given set of reads, however it can return one "...2925 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...s in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences Read the documentation New r...2908 days ago
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