Results for "Read"
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Hagfish - assess an assembly through creative use of coverage plots
...equencing data set. Hagfish has more power the larger the insert size of the paired end library is. Quick links: Installation,Operation, Read mappers, Hagfish scripts...2901 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...d open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major s...2901 days ago
- ...ontains bash/perl/R scripts for running the analysis presented in the paper to create a preliminary assembly, and to create and collate GC content, read coverage and taxon annotation...
2877 days ago
- ...te a complete analysis report, or executed individually to generate specific charts and tables. GAEMR standardizes input by converting a variety of read types to Binary Alignment Map...
2876 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing yo...f coverage (or vice versa). Instructions: set the read length/configuration and geno...mes Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage...2160 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to s...etion (INDEL) polymorphisms, and simulate reads with uniform substitution se...ulated polymorphisms, and writes the true read coordinates as well as the nu...
2867 days ago
- Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would be for...
2861 days ago
- ...ion of metagenomic high-throughput sequencing reads. Each read is directly assigned to a tax...i and microbial eukaryotes. Kaiju translates reads into amino acid sequences, w...ent. The search can process up to millions of reads per minute using, for exampl...
2863 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other featur...
2847 days ago
- ...detect variation. The methods are adaptive and support heterogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to 30 genom...
2792 days ago
