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...ity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and their annotation. It can read complete EMBL, GENBANK a...2791 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly p...tion from paired-end/mate-pair/long reads to order and orient the inte...ed by the paired-end/mate-pair/long reads (for further details see Gao...tains the wrapper script OPERA-long-read that enables scaffolding with...2789 days ago
BLAST Ring Image Generator (BRIG)
...and file parsing automatically via a simple GUI. Contig boundaries and read coverage can be displayed for...or even raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomi...2768 days ago
- ...be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER read the "Getting Started DECIPHER...
2768 days ago
- ...more generall short RNA) expression using short-read deep sequencing data. In its...MIRO is especially adapted for the analysis of reads generated with the Illumina...al gene (miRNA) expression profiles and cluster reads using one of several algorit...
2764 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a command su...
2758 days ago
- ...is phylogenetic classification of raw sequence reads into groups representing the...aster, and more difficult, by producing shorter read lengths than previous technol...classify DNA sequences, can accurately classify reads as short as 100 bp. Its accu...
2758 days ago
- ...owever, most of the information in read-to-reference or genome-genome...ctural variations captured by long reads or assembled contigs often n...ows patterns in alignments of many reads across multiple chromosomes,...es with long, short, or paired-end reads, Ribbon can also load coordi...
2747 days ago
- ...for opening the download package. Once you have done this, you will be ready to try some example analyses...to know if the program can perform a function that isn't listed, you can read our FAQ or submit a...
2741 days ago
- ...rate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing...ed sequencing data. ART can also simulate reads using user own read error mo...ation sequencing data analysis, including read alignment, de novo assembly,...
2734 days ago
