2489 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...les of the RNA-seq paired-end reads Software (Java) https://gi...irectly from raw NGS sequence reads by counting unique k-me...ird-generation long and noisy reads (10 kbp) using a dimensional...classification of metagenomic reads to known bacterial genomes u...2371 days ago
2351 days ago
2351 days ago
Run miniasm assembler on nanopore reads !
...a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by&n...does not have a consensus step. It simply concatenates pieces of read sequences to generate the fin...2330 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...ns an exact repeat somewhere, reads mapping to it will be mapped...you want to determine whether reads are mouse or human, it does..., either quantifying how many reads go to each reference, or spl...file for each of them. Paired reads will always be kept together...2314 days ago
List of visualization tools for genome alignments
...tter results. But sometime, we need publication ready figure of genomes. Following...tm JVM Java Visual Mapping tool for NGS reads http://www.springer.com/cda....net MagicViewer Visualization of short read alignment, identification of...2284 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...e else's permissions. The values of u, g, and o can be any number between 0 and 7. 7 — full permissions 6 — read and write only 5 — read and execute only 4 &mdas...2280 days ago
Awk for Bioinformatician and computational biologist
...s}' file The working of Awk is as followsAwk reads the input files one line at...syntax is as follows: BEGIN { Actions before reading the file}{Actions for ever...of another file in addition to the one you are reading, for example, in the state...2280 days ago
Some useful Bioinformatics links
...axonomy/term/131 De novo long-read assembly of a complex animal...TULIP - The Uncorrected Long read Itegration Pipeline https://...apping of nanopore sequencing reads with GraphMap | Nature Commu...il.google.com/mail/u/0/#inbox Read GTF file into R - Dave Tang's...2241 days ago