Comment on "Software packages for next gen sequence analysis"
Thanks for the useful list. I found this CUTADAPT useful. It searches for the adapter in all reads and removes it when it finds it.http://cutadapt.readthedocs.org/en/stable/guide.html3080 days ago
Comment on "Does anyone have Nanopore latest updates?"
Some useful links on Nanopore: Decoding long nanopore sequencing reads of natural DNA:http://www.nature.com/nbt/journal/v32/n8/full/nbt.2950.html Related links:- Data from pocket-sized genome sequencer unveiled http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147243422 days ago
Comment on "List of popular bioinformatics software/tools"
ARYANA: Aligning Reads by Yet Another Approach http://www.biomedcentral.com/1471-2105/15/S9/S12/abstract3537 days ago
Comment on "Does anyone have Nanopore latest updates?"
Long reads are here to rule. Thanks to Nick Loman from Birmingham UK, now we can have our first look at long reads from Oxford Nanopore. http://nextgenseek.com/2014/06/behold-oxford-nanopore-reads-are-here/3617 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nanopore reads from MinION Sequencer (Oxford Nanopore) http://figshare.com/articles/A_P_aeruginosa_serotype_defining_single_read_from_our_first_Oxford_Nanopore_run/10529963624 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A new trainable, high-speed and biologically relevant alignment algorithms of high-throughput sequencing reads to coding DNA http://nar.oxfordjournals.org/content/early/2014/05/26/nar.gku473.full3643 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3662 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment of the reads, finding duplicates, trimming, string pattern searches [1] Biostrings – Reading sequences in R [2] BSGenomes &n...3684 days ago
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