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Results for "Reconstruct"

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• • BioStar@biostar

  

  PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.

  Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple Developer tools and Fink (or MacPorts or Brew) must...

  Tags: PANDASEQ, program, align, Illumina, reads, PCR, primers, sequence, reconstruct, overlapping, sequence

  2050 days ago

• • Jit@jit.aber

  

  Cogent: a tool for reconstructing the coding genome using high-quality full-length transcriptome sequences.

  Cogent is a tool that identifies gene families and reconstructs the coding genome using high-quality transcriptome data without a reference genome, and can be used to check assemblies for the presence of these known coding sequences.   Cogent is a tool for reconstruct...

  Tags: Cogent, tool, reconstruct, coding, genome, high-quality, full-length, transcriptome, sequences, genome, evaluation

  1780 days ago

• • Abhimanyu Singh@abhimanyu

  

  KEGG Mapper – Reconstruct Pathway

  Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or K numbers. Each line of the gene l...

  Tags: KEGG, Mapper, Reconstruct, Pathway, Bacteria

  1968 days ago