chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like g...1849 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
...successor relationships in the ancestor. Then a greedy algorithm is used to reconstruct the ancestral orders by connecting genes into contiguous regions based on predicted adjacencie...2175 days ago
Epiviz: an interactive visualization tool for functional genomics data.
...for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps...2126 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
...k-mer size and instead uses a two pass method with both a short "k-mer" and a longer "K-mer". This allows FMLRC to correct through low complexity regions that are computational diffic...2094 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...ssical shortest path algorithm to find a sequence of overlapping short reads that minimizes the edit score to a long read and extending corrected regions by local assembly of unmapped...2084 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...caffolder ) for scaffolding genome sequences. The most important feature of this method is to improve the completeness of gene regions and long-coding gene regions (for instance, circRNA).2066 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...of data groups for visualisation and analysis Visualisation of mapped regions against an annotated genome....ow comparisons between data sets Statistical analysis of data to find regions of interest Creation of repo...2062 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
...ludes functionality to extract, analyze, and automate BLAST queries of regions of interest within the heatmap. This facilitates the investigation of quickly evolving coding regions, novel coding regions, and la...2045 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
...ludes functionality to extract, analyze, and automate BLAST queries of regions of interest within the heatmap. This facilitates the investigation of quickly evolving coding regions, novel coding regions, and la...2041 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembl...2018 days ago