Results for "Regulatory Motifs"
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...lying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, c...3945 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that i...3705 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enh...ide maps of interactions between regulatory elements. These interaction d...istal gene targets of non-coding regulatory elements and to facilitate pr...identify and prioritize critical regula...
2869 days ago
Method in Comparative genomics !!
...or the systematic de novo identification of regulatory motifs. The methods do not rely on previ...genome-wide conservation patterns of known motifs, we developed three conservat...collapsed into a small number of candidate regulatory motifs. These include mos...2733 days ago
- The eFORGE tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide sign...
2746 days ago
- Motif based sequence analysis suits The...lows the biologist to discover novel motifs in collections of unaligned n...rengths. It also allows discovery of motifs with arbitrary insertions and...or scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), s...
2690 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning sequ...useful in comparative sequence analysis for identifying conserved functional regula...2342 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828 mouse TF...iptional regulations. To efficiently search for regulatory relationships from over 20 mi...ivation or repression). Currently 8,972 (59.8%) regula...2326 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach ex...2309 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C]...1939 days ago
