Tools for Searching Repeats And Palindromic Sequences
...For more sophisticated repeat finding you will want to look at tools using Repbase for example: CENSOR CENSOR@GIRI CENSOR@EMBL-EBI RepeatMasker MUMmer (scan_for_match)...2224 days ago
Computational resources for TE discovery and TE detection
...www.girinst.org/ RepeatFinder http://cbcb.umd.edu/software/RepeatFinder/ RepeatGluer http://nbcr.sdsc.edu/euler/intro_tmp.htm RepeatMasker http://www.repeatmasker.org/ RepeatRunner http://ww...2287 days ago
Steps to find all the repeats in the genome !
...p-by-step guide: Install RepeatMasker: First, you need to install R...named "genome.fasta". ./RepeatMasker -pa <number_of_processors&...for different species in the RepeatMasker documentation[0]. <specie...it to conveniently parse the RepeatMasker output files. Here's an examp...261 days ago