Web Apollo: a web-based genomic annotation editing platform
.... One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to describe the...2472 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”), a Teaching Engine for Genomics, provides educational games to help students and researchers understand key bioinformatics concepts. The cur...2333 days ago
2181 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...sequencing data, they are very memory-intensive, limiting their applications to small data sets with few libraries. Texas A&M University researchers develop a transcriptome assem...2132 days ago
Genome U-Plot: a whole genome visualization
Genome U-Plot for producing clear and intuitive graphs that allows researchers to generate novel insights and hypotheses by visualizing SVs such as deletions, amplifications, and chromo...2121 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ad length. Several studies require long and accurate reads including de novo assembly, fusion and structural variation detection. In such cases researchers often combine both technologi...2084 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...imilarities. Details of the OrthoANI algorithm is given in (Lee et al. 2015). OAT employs an easy-to-follow Graphical User Interface that allow researchers to calculate OrthoANI values...1970 days ago
DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
DeepHiC is a GAN-based model for enhancing Hi-C data resolution. We developed this server for helping researchers to enhance their own low-resolution data by a few steps of clicks. Ab i...1523 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
...as well as paralogous regions within each genome and hypothetical ancestral genome. Maps listing these relationships are extremely valuable to researchers performing comparative analys...1445 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
...;KS and colinearity analysis workflows together with tools for modeling and visualization, rendering these analyses accessible to genomics researchers in a convenient manner. http...1381 days ago