MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
...i-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports biological particul...2058 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...nation in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. Source code for SKESA is f...2011 days ago
1953 days ago
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocs1791 days ago
Cactus: a reference-free whole-genome multiple alignment program
...ome multiple alignment program. The principal algorithms are described here: https://doi.org/10.1101/gr.123356.111 Cactus uses substantial resources. For primate-sized genomes (3...1740 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraplo...1732 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly,...1594 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
...s, from 82 Viridiplantae species. More than half of these genomes have been sequenced, assembled and/or annotated with JGI Plant Science program resources. By integrating this large co...1522 days ago
1471 days ago
1449 days ago