Musket: a multistage k-mer spectrum based corrector
...orrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quali...2352 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...and bound approach which starts branch expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and results in an optimal alignment faste...2350 days ago
Frontend: Perl Web framework documentation - Andrej Sali Lab
...displays the web interface, allowing a user to upload their input files, start a job, display a list of all jobs in the system, and get back job results. The main saliwebfronten...2318 days ago
2294 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
.../biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.full An ipython notebook to reproduce results in the paper can be found in...2289 days ago
Circoletto: visualizing sequence similarity with Circos
...n online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and download...2287 days ago
MIX: Combining multiple assemblies from NGS data
...ulting output assembly corresponds to a path in the extension graph that maximizes the cumulative contig length. The Mix algorithm, approach and results were published in BMC bioinfo...2199 days ago
Ranbow: a haplotype assembler for polyploid genomes
...be applied to other polyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of variant calling results and to infer the evolutionary...2175 days ago
LAMSA: fast split read alignment with long approximate matches
...e or non-co-linear variants. We benchmarked LAMSA with simulated and real datasets having various read lengths and sequencing error rates, the results demonstrate that it is substa...2192 days ago
2183 days ago