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Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...aeruginosa curated annotations. Metagenomic Version: Prodigal can run in metagenomic mode and analy...quences even when the organism is unknown. Ease of Use: Prodigal can be run in one step on a single genom...2692 days ago
- ...update --init make It is also convenient to add the location of progressiveCactus/bin to your PATH environment variable. In order to run the included tools (ex hal2ma...
2673 days ago
Many-Core Engine (MCE) for Perl example
...h zero involvement by the manager process while running. MCE MODELS The model...E::Loop, but allows for multiple code blocks to run in parallel with a slight cha...r MCE. It includes MCE::Hobo for running code asynchronously....2659 days ago
- ...uilt-in classes and roles. Routine ReferenceIndex of built-in subroutines and methods. Perl 6 ProgramsA collection of documents describing how to run the Perl 6 executable program...
2657 days ago
- ...ons in all or most of the genomes), join neighboring (adjacent in genomic coordinates, in each genome) cliques to form runs. Smaller cliques that are inconsistent with runs formed by larger cliques are...
2653 days ago
- ...in to account. MUMmer's alignment generating programs, Nucmer and Promer are used followed by the 'delta-filter' utility function. Users could also run tblastx on contigs that are n...
2643 days ago
Pacbio Long Reads Compatible Software and Tools
...Reference-based alignment Consensus and variant calling RNA analysis Epigenetic base modifications and methylation Barcoding Genome Browsers Run QC Frameworks and APIs...2616 days ago
- ...s) much each correspond to a single population, with variants called relative to a single reference sequence (one sequence in one FASTA file). Just run the main script, snpgenie.pl,...
2601 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...;(jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as wel...2547 days ago
slacTree: SVG Large Annotated Circular Tree drawing
...es of circular trees with more than 1000 taxa with custom annotations Because it is a single Perl script with very few dependencies, it is easy to run, and easy to further customiz...2506 days ago
