MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented...2487 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC,&nb...ite LIBSVM) Our goal is to help users from other fields to easily use SVM as a tool. LIBSVM provides a...2479 days ago
2473 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including...2370 days ago
2369 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable...ank-to-bank sequence similarity search tool providing significant acceler...rallel Local Sequence Alignment Search Tool and is was publishe...a general purpose sequence comparison tool providing the following benef...2358 days ago
2348 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly grap...2355 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) read...d reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-e...ely, 10 and 2% higher than the recently published tool FLASH. When COPE is applied t...2353 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning seque...ters, particularly the gap extension score. As an accurate alignment tool, ACANA is particularly useful...2353 days ago