2928 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...f features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require an...Lindblad-Toh, K. (2010). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinform...2928 days ago
Hagfish - assess an assembly through creative use of coverage plots
...f de novo genome assembly or identification of structural variation in a genome re-sequencing experiment. Hagfish requires a reference sequence and a paired end re...2921 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...s and deletions. To support the growing interest in larger structural variant (SV) discovery, MOSAIK provides explicit support for handling known-sequence SVs, e.g. mobile element inse...2921 days ago
2921 days ago
2907 days ago
2896 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configurat...2180 days ago
2888 days ago
2888 days ago