shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
..., but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you c...1234 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designe...mina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have...e or different compute resources. Source code for SKESA is freely available at h...2014 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast,...Tags: SKESA, strategic, k-mer, extension, scrupulous, assemblies, genome, assembly
2014 days ago