Results for "SMRT"
Blogs
Software and Tools to detect structure variation with long reads !!
...Vs detectable by short-read data. With Single Molecule, Real-Time (SMRT) Sequencing, you can access s...5/180/abstract More at https://sourceforge.net/projects/pb-jelly/ SMRT-SV: Structural variant and in...2622 days ago
Understating pacbio reads name !
...────────────────4────────────────┘└5┘└6┘└7┘└────8────┘└─9─┘└10┘ "m" = movie Time of Run Start (yymmdd_hhmmss) Instrument Serial Number SMRT Cell Barcode Set Number (a.k...2005 days ago
- +1 more Blogs
Bookmarks
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...ds generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT. Indeed, MOSAIK was the only...2921 days ago
- ...le it has been found in the transcriptome previously, genome sequencing did not identify a direct chromosomal fusion between these two genes. After SMRT sequencing, Ribbon shows that...
2768 days ago
- +7 more Bookmarks
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...otype Assembly from Long Gapless Reads A fast and memory-efficient method for haplotype assembly from long gapless reads, like those produced by SMRT sequencing technologies (PacB...2700 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...10 kbp) using a dimensionality reduction technique MinHash Software (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using the Overlap-Layou...2386 days ago
Wire posts
News
Phased Human Genome Assembly !
...ta Release: Highest-Quality, Most Contiguous Individual Human Genome Assembly to Date Blog post: For Reference-Grade Human Genome Assemblies, SMRT Sequencing Yields Optimal Res...2050 days ago
Bio-Scripts
Installing pb-assembly on Linux !
...-line users, and # # possibly newer than the currently available SMRT(R) Analysis builds. While #...-line users, and # # possibly newer than the currently available SMRT(R) Analysis builds. While #...2049 days ago
Setting up falconUnzip conda environments for genome assembly !
...-line users, and # # possibly newer than the currently available SMRT(R) Analysis builds. While #...-line users, and # # possibly newer than the currently available SMRT(R) Analysis builds. While #...2004 days ago
Groups
Single molecule Sequencing (SMS)
...scientists now keen to use SMS method to sequence molecules in comparatively less complex protocal and less time. One of most successful so far is SMRT from Pacbio and others will b...3242 days ago
Tags
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence. The reference can be read from a FASTA file or randomly gener...Tags: SimLoRD, read, simulator, third, generation, sequencing, reads, Pacific, Biosciences, SMRT, error, model
2097 days ago
LoRMA: A tool for correcting sequencing errors in long reads
An error correction method that uses long reads only. The method consists of two phases: first, we use an iterative alignment-free correction method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are further polished using long-distance dependenci...Tags: LoRMA, tool, correction, sequencing, errors, long, reads, PacBio, SMRT
2082 days ago
Comments
Comment on "LAMSA: fast split read alignment with long approximate matches"
...ds. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless overriden. [null] (Illumina Moleculo) pacbio (PacBio SMRT): -i25 -l50 -m1 -M1 -O1,1,2,2...2137 days ago
