Results for "SNP"
Top-level pages
Some useful Bioinformatics links
...cademic.oup.com/bioinformatics/article/30/18/2559/2475628 Reference-free SNP detection: dealing with the d...deluge https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4083407/ GATB/DiscoSnp: DiscoSnp is designed for dis...2238 days ago
My commonly used commands in Bioinformatics
...sembly.fasta nucmer -p nucmer assembly.fasta racon_assembly.fasta show-snps -C -T -r nucmer.delta Thi...table. You can exclude indels with the -I option in show-snps. This process (Racon...2106 days ago
List of non-commercial NGS genotype-calling software
...rucially on the accurate calling of SNPs and genotypes. Recently deve...A list of programs for genotype and SNP calling : SOAP2 http://...gle individual genotype caller (SOAPsnp) realSFS http://128.32....genotype caller (Unifed Genotyper), SNP filtering (Variant Filtration...2092 days ago
Frequent parameters for bioinformatics tools !
...type contig bowtie2 (mapping) --sensitive minimap2 (mapping) -a -x map-ont samtools mpileup (SNP detection) -uRI bcftools call (SNP detection) --variants-only...1282 days ago
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