Bioinformatics tools developed for Oxford Nanopore data analysis !
...analysis and visualization software https://github.com/arq5x/poretools SSPACE-LongReadGenome scaffolding tool http://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE-longread SMISGenome scaffold...2318 days ago
2555 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performa...1561 days ago
2149 days ago
Genome Assembly Tools and Software - PART2 !!
...rapid discovery of errors and comparisons between similar assemblies. SSPACE 3.0 – Scaffolding pre-assembled Contigs using Paired-read dataSSPACE (SSAKE-based Scaffolding...2684 days ago
Some useful Bioinformatics links
...zoho.eu%2Fportal%2Favaga2 lh3/minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding bacteri...2239 days ago
Gap filling or Contigs extensions tools !
...://derisilab.ucsf.edu/index.php?page=software You could also look at SSPACE (http://www.baseclear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/sspacev12/), ATLAS tools (http://www...2163 days ago
1721 days ago
Tags: Bioinformatics, SSPACE, Scaffolding, NGS, Genome, Contig
2555 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and GMcloser. gapFinisher can fill gaps in draft genom...Tags: gapFinisher, reliable, gap, filling, pipeline, SSPACE, LongRead, scaffolder, NGS, Tools
1561 days ago