Results for "SSPACE"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
...analysis and visualization software https://github.com/arq5x/poretools SSPACE-LongReadGenome scaffolding tool http://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE-longread SMISGenome scaffold...2313 days ago
Bookmarks
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using...process. By using the distance information of paired-end and/or matepair data, SSPACE is able to assess the order,...
2550 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performa...1556 days ago
- +1 more Bookmarks
Files
- ...-F 0x4 - | /usr/local/bin/samtools sort -@ 20 -no - temporarySam > FALCON-Unzip-Scaff.bamMapping long-reads using blasr.../home/urbe/Tools/SSpace/SSPACE-LongRead_v1-1/blasr -nproc 40...
2144 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...rapid discovery of errors and comparisons between similar assemblies. SSPACE 3.0 – Scaffolding pre-assembled Contigs using Paired-read dataSSPACE (SSAKE-based Scaffolding...2678 days ago
Top-level pages
Some useful Bioinformatics links
...zoho.eu%2Fportal%2Favaga2 lh3/minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding bacteri...2234 days ago
Gap filling or Contigs extensions tools !
...://derisilab.ucsf.edu/index.php?page=software You could also look at SSPACE (http://www.baseclear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/sspacev12/), ATLAS tools (http://www...2158 days ago
Wire posts
Bio-Scripts
- #!/bin/bash cd `pwd` perl ~/apps/SSPACE-1.2_linux-x86_64/SSPACE_v1-2.pl \ -l libraries.txt \ -s Contigs_over200_nocp.fasta \ -k 5 \ -a 0.7 \ -x 1 \ -m 30 \ -o 20 \ -b Rayk31_scaffolds_extension
1715 days ago
