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Results for "SamTool"

Wire posts

  • Surabhi Chaudhary

    #BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \ awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

    2965 days ago

  • Surabhi Chaudhary

    #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

    2965 days ago

Bio-Scripts

  • Shruti Paniwala

    Samtools commands for bioinformatician !

    ...sam # -o : output file name samtools view -b -S -o sal_sej.bam sa...# -f INT show flag matches samtools -f 4 sal_sej.bam | less #...# always index sorted files samtools index sal_sej_sorted.bam.bam...### results into txt file samtools depth /path/to/sorted_bam.ba...

    1603 days ago

Tags

  • Jitendra Narayan

    List of popular bioinformatics software/tools

    In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.

    Tags: Bioinformatics, SamTool, SAM, BAM, IGV, BLAT, Software, Tools

    3945 days ago

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