Samtools commands for bioinformatician !
...sam # -o : output file name samtools view -b -S -o sal_sej.bam sa...# -f INT show flag matches samtools -f 4 sal_sej.bam | less #...# always index sorted files samtools index sal_sej_sorted.bam.bam...### results into txt file samtools depth /path/to/sorted_bam.ba...1609 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.Tags: Bioinformatics, SamTool, SAM, BAM, IGV, BLAT, Software, Tools
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Comment on "List of popular bioinformatics software/tools"
SAMtool quick tutorial at http://davetang.org/wiki/tiki-index.php?page=SAMTools http://samtools.sourceforge.net/samtools.shtml3654 days ago