Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hou...2333 days ago
List of visualization tools for genome alignments
...xt-generation sequencing (NGS) data and the results of analyses within the context of the sequence, and also its six-frame translation http://www.sanger.ac.uk/resources/software/arte...2285 days ago
Gap filling or Contigs extensions tools !
...c.bcm.tmc.edu/content/bcm-hgsc-software), and SCARPA (http://compbio.cs.toronto.edu/hapsembler/scarpa.html). See the PAGIT protocol: http://www.sanger.ac.uk/resources/software/pagi...2167 days ago
List of non-commercial NGS genotype-calling software
...for genotype calling. Requires fine-scale linkage map QCall ftp://ftp.sanger.ac.uk/pub/rd/QCALL Multi-sam...easible’ genealogies can be generated using Margarita (http://www.sanger.ac.uk/resources/software/marg...2098 days ago