Results for "Satsuma"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...r errors resulting from limitations in map construction methodologies. CoGe (http://genomevolution.org/CoGe/SynFind.pl ) Satsuma (http://evomics.org/learning/genomics/satsuma/) Cinteny (http://cinteny.cc...2624 days ago
Bookmarks
- ...equences, alignments, variation etc.), as well as specialized tool sets for various analyses. It also features three sequence alignment packages: Satsuma, a highly parallelized progra...
3022 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment...-coding genes, or neutral sequences. Satsuma does not require any pre-proc...atically detect ambiguous mappings. Satsuma has parallelization built-in...y e-mailing us) is here. If you use Satsuma in your research, please cite...2928 days ago
- +1 more Bookmarks
Top-level pages
Some useful Bioinformatics links
...om/reubwn/scripts ICEberg http://db-mml.sjtu.edu.cn/ICEberg/index.php Satsuma - Evolution and Genomics http://evomics.org/learning/genomics/satsuma/ A complete bacterial genome...2255 days ago
Bio-Scripts
Loop over with all files in a directory in bash
...-11-13/GCA_000196735.1_ASM19673v1_genomic.fna path=/home/urbe/Tools/SATSUMA/satsuma-code-0 for f in $FILES do...ction on each file. $f store current file name mkdir $ff $path/SatsumaSynteny -q $ref -t $f -o $ff...2345 days ago
Perl script to run SATSUMA in loop !
...use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to se...uery genome my $tarfile = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/...2154 days ago
