3007 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrange.... Nevertheless is more directed to large-scale since that the main aim of the research is to know where the lar...2933 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annot...ns. Recently, in order to make RAST a more useful research tool and to keep pace with ad...(RASTtk), a modular version of RAST that enables researchers to build custom annotation...2932 days ago
2919 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alig...el free to add your own by e-mailing us) is here. If you use Satsuma in your research, please cite: Grabherr, M. G....2917 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R...raphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a...2909 days ago
2876 days ago
AutoDock Vina: an open-source program for doing molecular docking.
AutoDock Vina is an open-source program for doing molec...nbsp;in the Molecular Graphics Lab at The Scripps Research Institute. It is especia...e most cited docking software applications in the research community. http://vina.scr...1424 days ago
2800 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have...ncing. The main results of GAGE have now been published in the journal Genome Research: GAGE: A critical evalua...2799 days ago