BOL: Results for "Scriptn GTF"

Results for "Scriptn GTF"

- Jit@jit.aber
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server...ebi.ac.uk/pub/databases/gencode/Gencode_human/release_29/gencode.v29.annotation.gtf.gz.
1151 days ago
- Jitendra Narayan@admin
CrossMap
CrossMap is a program for convenient conversion of genome coordinates (or annotation fi...orts most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is designed t...
3020 days ago
+9 more Bookmarks

- Jitendra Prajapati@jprajapati81
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-...Genomes Project Accepts downloaded tracks from dbSNP Also accepts: FASTA, GFF/GTF/GVF, BED, Wiggle, Cosmic, UCS...
2920 days ago
- EagleEye@santhilalsubhash
Convert EnsEMBL GTF to Annotation table (Geneid, GeneSymbol, GeneWiseChrLocation, GeneClass, Strand) Raw
Bash Script source: https://gist.github.com/s...rmation: This script converts EnsEMBL GTF (Ex: https://gist.github...900a2baefbb6534f1299fd30cb57a29/sample.GTF) file to annotation table for...f0005c4ce7321c5ae57fc8b4a14c7f4/sample.GTF_enst_annotation.txt)2) Gene w...
2118 days ago
+1 more Top-level pages

- Abhimanyu Singh@abhimanyu
To print the matching pattern line perl -ne '/pattern/ && print' infile.gtf #Perloneliner #Tipsoftheday
3881 days ago
- Jit@jit.aber
Comparing Ensembl GTF and cDNA https://www.r-bloggers.com/comparing-ensembl-gtf-and-cdna-2/ #Comparing #Ensembl #GTF #cDNA
1566 days ago

- ArrayGen Technologies@arraygen
ArrayGen Next Generation Genome Browser Coming Soon !!!
The ANG genome browser is a visualization tool, developed by ArrayGen Technologies. Thi...The main features are, it supports many standard file formats such as GFF, BED, GTF, FASTA, VCF, BAM and it can b...
3088 days ago
- Gudiya Pal@gudiya
Genome Workbench 2.10.7
Genome Workbench 2.10.7 is here! New features include added support for local custom BL...ot working Fixed tblastn (protein BLAST) not working in standalone mode Fixed GTF export failure...
2876 days ago

- BioStar@biostar
Bash script to get exon fragments from genome files !
#Exons are already defined in the GTF file, so we simply need to print lines that are marked exonic. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $3=="exon" {print $1,$4-1,$5}' | bedtools sort | bedtools merge -i - | gzip > my_exon.bed.gz
1377 days ago
- BioStar@biostar
Bash script to extract intronic fragments !
#To obtain introns, we simply need the gene and exonic coordinates; #by subtracting t...ns from the genic region, we have the intronic region. gunzip -c genome_file.gtf.gz | awk 'BEGIN{OFS="\t";} $...
1377 days ago
+3 more Bio-Scripts