RNA-Seq De novo Assembly Using Trinity
...umes of RNA-seq reads. Trinity partitions the sequence data into many individual de...rm assembles the RNA-seq data into the unique sequences of transcripts, often genera...for a given gene (or sets of genes that share sequences in common). Chrysalis then p...2958 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2944 days ago
2944 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using com...2944 days ago
2935 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...ng up your computing environment Retrieving and storing sequencing files (your own data or from public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads t...2925 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...rt issues encountered. Canu is a hierachical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected seq...2907 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human...2924 days ago
YASS :: genomic similarity search tool
...similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text forma...ristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER...-score and E-value evaluated according to the sequence background frequencies param...2918 days ago
2907 days ago