Comment on "Software packages for next gen sequence analysis"
...me assemblies tool and related papers at http://www.plosone.org/browse/Sequence+assembly+tools?startPage=53&a...;sortValue=&unformattedQuery=*%3A*&sortKey=&filterSubjects=Sequence%20assembly%20tools&volume...3254 days ago
Comment on "Five points for bioinformatics software/tools"
This paper "Buying in to bioinformatics: an introduction to commercial sequence analysis software" provide an in-depth overview. Link @ http://bib.oxfordjournals.org/content/early/2014/09/01/bib.bbu030.abstract.html?3528 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
Challenges and Solutions in the Analysis of Next Generation Sequence Data http://lh3lh3.users.sourceforge.net/download/sam-20100630.pdf3597 days ago
Comment on "List of popular bioinformatics software/tools"
There are different ways to perform exome sequence analysis, but GATK have a good guide for 'Best Practice': http://www.broadinstitute.org/gatk/guide/best-practices3600 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3649 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Parallelized pairwise sequence alignment using CUDA on multiple GPUs http://www.biomedcentral.com/1471-2105/10/S7/A33660 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
I love awk but recommend you to try bioawk . Bioawk is a modified version of awk which will parse some common sequence formats. https://github.com/lh3/bioawk3693 days ago
Comment on "Latest paper on comparison of mapping tools"
...hnologies has led to an exponential growth of sequence data. To tackle this ‘d...eley National Laboratory introduce the BioPig sequence analysis toolkit as one of th...Hadoop-based analytic toolkit for large-scale sequence data http://bioinformatics.ox...3820 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Biological Sequence Matching using Boolean algebra vs. Fuzzy Logic http://www.ijcaonline.org/volume26/number11/pxc3874383.pdf3832 days ago
Comment on "Bio++ : C Language libraries for your biological need"
...tic tree and an evolutionary model).bppAncestor (Reconstruct ancestral sequences).bppConsense (Build consensus trees and compute bootstrap values).bppSeqMan (Sequence manipulation and file format...3838 days ago