3001 days ago
3001 days ago
2992 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jeru...NA-seq reads. Trinity partitions the sequence data into many individual de...les the RNA-seq data into the unique sequences of transcripts, often genera...en gene (or sets of genes that share sequence...2978 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2964 days ago
2964 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome...2964 days ago
2955 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...rom public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads t...pt discovery and differential analysis with Cufflinks Differential...A-Seq) Microarray Basic analysis of Affymetrix Gene Expression...2944 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such...ipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence...2927 days ago