Results for "Sequence analysis."
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in pla...Full Text Compression of DNA sequence reads in FASTQ format. Deorow...Central [requires a reference sequence] HiTEC: accurate error corre...ntial expression analysis for sequence count data. Anders and Huber,...3791 days ago
List of bioinformatics open source projects/software.
...http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Networ...dge exchange. Database of annotations aboute sequence variants with clinically rele...for promoter pattern generation and promoter analysis. MeV: Multi-Experiment Viewer...3769 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief descri...re/bottlesim.htmlCASS Protein Sequence Simulation http://www.wyoming...late the evolution of protein sequences under the constraints of the...a C++ program that simulates sequence-like data over large genomic...3749 days ago
List of In-silico Binding Site Prediction Tools
...so available enabling further analysis. PROSURFER: http://163.43.14...ding residues from amino acid sequences is important for the automate...pplied for classification and analysis. The original Screen, written...tion. Numerous structure- and sequence-based methods have been develo...3756 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around ma...rs-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence-...3640 days ago
Next generation sequencing in R or bioconductor environment
...additional information about sequence ranges, such as chromosome id...ied to any ranked list of DNA sequences. Documentation rGADEM: Do...a pipeline for ChIP-Seq data analysis. Documentation BayesPeak Ba...des functions to retrieve the sequences around peaks, obtain enriched...3637 days ago
Commercial and public next-gen-seq (NGS) software
...aligner. It aligns short DNA sequences (reads) to the human genome...MP - Assembles to a reference sequence. Developed with Applied Biosys...e genomes, and carry out post-analysis. ZOOM is developed to be highl...reads to the finished genome sequence. Highly repetitive elements ar...3531 days ago
- Since few years miRNA has shown to play important role in therapeutic related research...Sequencing data : http://www.illumina.com/applications/epigenetics/small_rna_analysis.ilmn More: http://www.biocon...
3508 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing file...includes handy tools such as "Reverse Complement", "Jump to", "Copy and Paste sequences...3553 days ago
- Pathway Analysis is usually performed with aim to enrich the genes with their function...5 http://bioinformatics.mdanderson.org/MicroarrayCourse/Lectures09/Pathway%20Analysis.pdf http://gettinggeneticsdon...
3508 days ago
