Useful Publications and Websites for Deep Sequencing Data Analysis
...me. Grabherr et al, Nature Biotechnology 29:644 - 652, 2011. PubMed [T...ence of editing or are simply sequencing errors - the authors stand by...otyping using next-generation sequencing. Davey et al., Nat Rev Genet.... Full Text Diversity Arrays Technology (DArT) and next-generation se...3782 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified...://emboss.sourceforge.net/ Suite of packages for sequencing, searching, etc. Gaggle htt...a software package to analyse next-generation resequencing...3759 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework...specified models. http://research.nhgri.nih.gov/gasp/GemSIM Next generation sequencing...3739 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardiz...3630 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows...ionality for short read sequences produced by high throughput sequencing technologies. While support is provided for many sequencing...3627 days ago
Commercial and public next-gen-seq (NGS) software
...obtained from next-generation sequencing machines (specifically that o...s, emerged by next-generation sequencing technology, back to the reference genome...thered through 454 sequencing technology (GS20 or GS FLX). Compatible...ompleted will handle next-gen sequencing data. A partially implemented...3521 days ago
3498 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for t...e opening and analysis of DNA sequencing files - ab1. It includes hand...determine the quality of your sequencing files. This app works with c...e opening and analysis of DNA sequencing files - ab1. It includes hand...3544 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...tute of Himalayan Bioresource Technology, Palampur ITRC - Industrial...ational Institute of Science, Technology & Development Studies, Ne...culture Indian Institute of Technology Indira Gandhi Center for At...versity Institute of Chemical Technology Narendra Deva University of...2573 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that bi...ication specific tasks. e.g. analysis of microarray experiments and Next-Gen sequencing...3364 days ago