Results for "Sex chromosome"
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PRISM is a software for split read (reads which span across a structrual variant -...he direction of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosome trans-location events. P...2713 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE ver...nformation about and downloads for methodology for Chromosome Painting. It is not a facilit...Sorry if you were misled by the punchy name! About Chromosome Painting Painting is an effic...2648 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Id...Options --ideobed, i A bed file of reference contig lengths/chromosome names --heatmap, -h Fill chromosomes with normalized heatmap...
2648 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (...y BAM files if no sam record was found for a chromosome. A pair of 'mock' SAM-Records...exed reference file) REQUIRED. -u (unmapped chromosome name): default:Unmapped -e |...2633 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of t...cies in modern species. We combine the results from this method with data from chromosome painting experiments to produ...2554 days ago
orthodotter: Synteny plots (oxford grid)
orthodotter -h ------------------------------------------------------------------...-fSize <int> : fontSize, default is 1 -filter : check chromosome names -h :...2471 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across dif...2370 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-frie...nteractive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal...of useful functions facilitating the procedure of chromosome analysis," explain the scient...2361 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatical...2350 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 gen...dchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 20...2330 days ago
