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TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short a...2603 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads...2636 days ago
- Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separat...sReading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short i...
2622 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate...ph based approach: it builds a succinct De Bruijn Graph (DBG) representing the short r...2596 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for t...ls. It is suitable for protein-protein search as well as DNA-protein search on short r...
2579 days ago
- The process of finishing a genome and moving it from a draft stage (the result of sequencing a...emblies with mate-pair dataMate-pair information can be valuable in augmenting short-r...
2555 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short b...2505 days ago
- The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool developed at the Institute for Genome Sciences in the University of Maryland's...
2519 days ago
- https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MIT7_91JS14_Lecture6.pdf
2505 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp...set, avoiding an explicit error correction step as used in other short-r...2385 days ago
