Results for "Short Courses"
Top-level pages
Commercial and public next-gen-seq (NGS) software
...r Mac OS X.SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a I...omeMapper - GenomeMapper is a short read mapping tool designed fo.... Paper is here. SOAP - SOAP (Short Oligonucleotide Alignment Pro....SSAHA has been optimized for short-r...3533 days ago
Software packages for next gen sequence analysis
...ac OS X. * SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a I...omeMapper - GenomeMapper is a short read mapping tool designed fo...Paper is here. * SOAP - SOAP (Short Oligonucleotide Alignment Pro...2, Solaris and Mac * PolyBayesShort -...3256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including a...Trust Sanger) calls small indels from short-read sequences, only can hand...hon, Cython; Can identify SNPs, MNPs, short indels, and larger variants;...calls consensus genotype Input:SOAP short r...2922 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome....ragment and keep track of the paired data. Adapter Short oligonucleotides which are at...ed version of a genome that can be used for mapping short D...
2883 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of...data inquiry, high-throughput short reads data is always initiall...Calling pipeline for Illumina Short Reads FermiKit is a d...– A Suffix Array based Short Peptide Assembler for Metagen...2699 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The l...is called a split-read. These types of reads also indicate a potential SV or a short i...2536 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determinatio...ssignment in metagenome analysis by exact k-mer search; LCA assignment of short r...2385 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was...correction) --careful tries to reduce number of mismatches and short i...
2365 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improvi...ourceforge.net MagicViewer Visualization of short read alignment, identificatio...; Alignments of huge-scale single-end and pair-end short r...2298 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so require a C&nb...b.h... yeschecking whether byte ordering is bigendian... nochecking for short... yeschecking size of short.....2232 days ago
