Commercial and public next-gen-seq (NGS) software
...is also able to find SNPs with its own alignment. It has a graphical viewer, but again for its own alignment format.SSAHA has been optimized for short-reads, too. But yes, SSAHASNP appe...3516 days ago
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Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq softwar...3239 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...with GATK) Reference Genome: indexed FASTA file Output: VCF files Dindel Description: (Wellcome Trust Sanger) calls small indels from short-read sequences, only can handle Il...2906 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation...2208 days ago
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Genome Assembly Tools and Software - PART1 !!
...ne sequencing, mutation detection, forensic human identification, systematics, and more. Minia 2.0.3 – Short-read Assembler based on a de Bruijn graph Minia is a short-read assembler based on a de Bruij...2683 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely t...2656 days ago