Results for "Short-Read"
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Follow this: Settings file Error Your web server does not have permission to create the settings.php file in your installation directory. You have two choice...889 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this here, or try it later on your own data. Get data We will use the sa...822 days ago
- Short Read Simulators With the popularity of next-generation sequencing (NGS) technologies, many NGS read simulators have been developed. Currently, many of the popular...
580 days ago
- Types of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in...
420 days ago
Bioinformatics tools for genome assembly !
...ABySS: A parallelized assembler for large genomes that uses de Bruijn graphs. Velvet: Another de Bruijn graph-based assembler optimized for short-read sequencing data. SOAPden...283 days ago
Mitochondrial genome assembly tools !
...ria. It utilizes a seed-and-extend algorithm and is suitable for both short-read and long-read data. MITOS2:...pplied to mitochondrial genome assembly, especially when working with short-read data. When selecting a mitoc...239 days ago
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