2160 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Escape; use LWP...2932 days ago
2926 days ago
Extract fasta sequence from a multifasta file with coordinates
...from a directory of Fasta files my $db = Bio::DB::Fasta->new('/path/to/fasta/files/'); my @ids = $db->get_all_primary_ids; # Simple access my $seqstr = $db-...2548 days ago
Create genome scaffolding with Perl
..., KT => "T", AG => "R", AR => "A", GR => "G", CT => "Y", CY => "C", TY => "T", AT => "W", AW => "A", TW => "T", ); # if "simple" ambiguity can be found, retu...2324 days ago
Installing Busco version 4.0.6
...pc-cmd-1.02-pl526_0 perl-json-pp bioconda/noarch::perl-json-pp-4.04-pl526_0 perl-locale-maket~ bioconda/linux-64::perl-locale-maketext-simple-0.21-pl526_2 perl-module-b...1469 days ago
Installing pb-assembly on Linux !
...XML-Parser/2.44-foss-2016a-Perl-5.22.1 libGLU/9.0.0-foss-2016a XML-Simple/2.20-goolf-1.4.10-Perl-5.16.3...2050 days ago
1525 days ago
1458 days ago
1232 days ago