simuG: a general-purpose genome simulator
...enchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for simulating the full-spectrum of genomic variants (single nucleotide polymorphisms, Ins...1634 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
...or long-read data. However, it operates on FASTA files, not the GFA graphs that miniasm makes. That's where Minipolish comes in. With a single command, it will use Racon to...1629 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...anu, but requires significantly less computing resources and storages. After assembly, the per-base error rate is about 97-98%, to further improve single base accuracy, please use&nbs...1596 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
...to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), m...variants (indels), and structural variants (SVs) simultaneously with a single simple model. More at&...1573 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
...oding skills. develop deep learning applications using popular libraries such as Keras, TensorFlow, PyTorch, and OpenCV. If you have just a single notebook to submit, use the w...1570 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...sp;https://github.com/mourisl/Rcorrector/. Usage: perl run_rcorrector.pl [OPTIONS] OPTIONS: Required -s seq_files: comma separated files for single-end data sets -1 seq_files_...1565 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1552 days ago
1541 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
...r whole genome diagrams developed using the R Shiny package. To create single-genome plot by aligning genome data along all chromosomes of a single genome, go to the Single-geno...1541 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of...1524 days ago