slacTree: SVG Large Annotated Circular Tree drawing
...2009 to fill a need for producing publication quality figures of circular trees with more than 1000 taxa with custom annotations Because it is a single Perl script with very few dep...2499 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...inutes to assemble a bacterial genome. Under the default setting, miniasm assembles 9 out of 12 PacBio datasets and 3 out of 4 ONT datasets into a single contig. The 12 PacBio data se...2352 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2351 days ago
MinION_GC: An R script to do some QC on MinION data
...s on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So...2345 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...ultiple alignment files (.maf) from leaf and branch nodes from a completed simulation and with the help of mafJoin, join them together into a single maf covering the entire simul...2340 days ago
mojolicious: a next generation web framework for the Perl programming language.
...ndeavor to implement this idea using bleeding edge technologies. Features An amazing real-time web framework, allowing you to easily grow single file prototypes into well-str...2305 days ago
GenomeTools: The versatile open source genome analysis software
... genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is b...2279 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...on tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single command, (ii) testing and v...2268 days ago
Genome assembly stats plotting
...circular plot that summarises most commonly used assembly metrics in a single visualisation. Each of these...lowing toggling between alternative views, and each can be applied to a single or multiple assemblies to all...2259 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genome...2252 days ago