High-throughput genomics has revolutionized biological research, however, while the nu...ed expectations of gene content from near-universal single-copy orthologs selected from&...ive lineage-specific sets of Benchmarking Universal Sing...
Database to Database Conversions
db2db allows for conversions of identifiers from one database to other database i...y depending on the number of outputs and the options selected. Conversions to a sing...
The Genome Assembly Evaluation Metrics and Reporting (GAEMR) pa...egrated modules. These modules can be executed as a single program to generate a complet...es to Binary Alignment Map (BAM) format, allowing a sing...
Function
WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs...fold_extender, which works with big, unambiguous contigs, or when they run out, sing...
Microbiome analysis using a single application
MEGAN6 is a comprehensive toolbox for interactively analyzing microb...of input
Why use MEGAN6?
The software is:
Easy to use. MEGAN6 is a sing...
Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering...cing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to...better results.To run discovery or genotyping on a sing...
R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of...more customized figures and scripting.
http://www.e-rna.org/r-chie/plot.cgi?eg=sing...
Murasaki is an anchor alignment program that is
exteremely fast (17 CPU hours for whole Human x Mouse genome (wit...rily parallelizable across multiple nodes using MPI)
memory efficient. (Even a sing...
The accurate description and annotation of structural variants can be complex. This is due to the different re...the actual base pair positions. Furthermore, multiple rearrangements in a sing...
Visualization has played an extremely important role in th...we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH1...genes (Figure 1a). More gene fusions of this cancer cell line are investigated in Supp...