Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Probl...ng genes (which are essential for general cell functions) or other genes frequently expressed in a cell. At these locations, the CG s...e detail understanding of HMM read this excellent tu...3828 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...of Illumina second-generation sequencing data. Cox et al, BMC Bioinfor...ence of editing or are simply sequencing errors - the authors stand by...otyping using next-generation sequencing. Davey et al., Nat Rev Genet...cribed by Proost et al, Plant Cell 21:3718, 2010 Full Text The Europe...3782 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely use...p://emboss.sourceforge.net/ Suite of packages for sequencing, searching, etc. Gaggle htt...) a software package to analyse next-generation resequencing data3760 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage...research.nhgri.nih.gov/gasp/GemSIM Next generation sequ...ism data for a recom- bining region within which a single bi-allelic site has experienced n...3740 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Pro...al structure and 3D data in a single search. Currently it is the o...stics of the binding sites of single proteins or classes of protei...two stages, labeling of grid cells with depth factors followed...3747 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and...re small and awesome Perl programs that fit in a sing...e spaces, delete all leaving one(make the file a single spaced file).perl -00 -pe '$_.="\...3631 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor pac...d sequences produced by high throughput sequencing technologies. While support is provided for many sequencing technologies, this package is...information from Ensembl TileQC: Flow Cell Quality Visualization rtracklayer:...3628 days ago
Commercial and public next-gen-seq (NGS) software
...e alignment of paired-end and single-end Illumina reads. Uses a Needle...s, emerged by next-generation sequencing technology, back to the refer...ned for very short reads. The single-processor version is useful for a...ompleted will handle next-gen sequencing data. A partially implemented...3522 days ago
3499 days ago
Apps for Busy Bioinformatics Researchers !!!
...e opening and analysis of DNA sequencing files - ab1. It includes hand...C mutations, and CNV data for cell lines. Does not require a network...als like Nature, Science, and Cell. You can also add your own RSS feed...yzing cases with whole genome sequencing data that have been published...3544 days ago