BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine whic...reads)In this case, "int=t" means that the input file is paired and interleaved. For single-end...2318 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically...-saarland.de/chair/projects/BioMiner Cell Illustrator Petri nets...ating biological networks http://www.cellillustrator.com COPASI Analy...ta http://pixie.princeton.edu/pixie CellPublis...2292 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results...asy visualization of putative single nucleotide and structural variati...sp; Alignments of huge-scale single-end and pair-end short reads htt...quences in an entire Illumina sequencing run http://www.sourceforge.n...2287 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and ali...2277 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that...s experience in molecular biology, next-generation sequencing based testing, clinical...l testing. Dr. Suman holds a Ph.D in Molecular and Cell Biology from Indian Institute of Sc...2268 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material bet...o; , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in multicellular e...854 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangeme...he European eel genome from nanopore sequencing reads | Scientific Reports h...st and sensitive mapping of nanopore sequencing reads with GraphMap | Nature...ssembled de novo using only nanopore sequencing data | Nature Methods https:...2245 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studies for exploring com...ding variants, that is, nonsynonymous sing...ding variants, that is, nonsynonymous single‐nucleotide variants, and noncodin...2207 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illum...ese STSes, subclone these clones into a paired-end sequencing vector, and generate paired-e...then try steps (1) and (2) again, adding these new sequencing reads to what you had before....2169 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral g...e post-genomic era. Thanks to the improvement of algorithms and of better sequencing and synthesis techniques, the...2183 days ago