Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 bases) in which the frequency...3843 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ffective, high-throughput DNA sequencing libraries for multiplexed tar...of Illumina second-generation sequencing data. Cox et al, BMC Bioinfor...ence of editing or are simply sequencing errors - the authors stand by...otyping using next-generation sequencing. Davey et al., Nat Rev Genet...3798 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, ch...//emboss.sourceforge.net/ Suite of packages for sequencing, searching, etc. Gaggle htt...a software package to analyse next-generation resequencing data...3775 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage...specified models. http://research.nhgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator http://sourcef...3756 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of pro...3763 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file format...3647 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis...ionality for short read sequences produced by high throughput sequencing technologies. While support is provided for many sequencing technologies, this package is...3643 days ago
Commercial and public next-gen-seq (NGS) software
...ling. Supports all commercial sequencing and microarray technologies.&...obtained from next-generation sequencing machines (specifically that o...s, emerged by next-generation sequencing technology, back to the refer...ompleted will handle next-gen sequencing data. A partially implemented...3538 days ago
3515 days ago
Apps for Busy Bioinformatics Researchers !!!
...e opening and analysis of DNA sequencing files - ab1. It includes hand...determine the quality of your sequencing files. This app works with c...e opening and analysis of DNA sequencing files - ab1. It includes hand...yzing cases with whole genome sequencing data that have been published...3560 days ago